J6_9JPO_001

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9JPO|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9JPO|1|a|G|45
9JPO|1|a|G|46
*
9JPO|1|a|C|179
9JPO|1|a|G|180
9JPO|1|a|A|181
9JPO|1|a|A|182
9JPO|1|a|C|183
*
9JPO|1|a|G|214
9JPO|1|a|G|215
9JPO|1|a|A|216
9JPO|1|a|A|217
9JPO|1|a|A|218
9JPO|1|a|A|219
9JPO|1|a|G|220
9JPO|1|a|A|221
9JPO|1|a|A|222
9JPO|1|a|A|223
9JPO|1|a|U|224
*
9JPO|1|a|A|231
9JPO|1|a|G|232
9JPO|1|a|A|233
9JPO|1|a|U|234
9JPO|1|a|U|235
*
9JPO|1|a|A|262
9JPO|1|a|G|263
9JPO|1|a|C|264
9JPO|1|a|A|265
9JPO|1|a|G|266
*
9JPO|1|a|C|426
9JPO|1|a|U|427
9JPO|1|a|A|428
9JPO|1|a|A|429
9JPO|1|a|A|430
9JPO|1|a|U|431
9JPO|1|a|A|432
9JPO|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34