J6_9JPP_001

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9JPP|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9JPP|1|a|G|45
9JPP|1|a|G|46
*
9JPP|1|a|C|179
9JPP|1|a|G|180
9JPP|1|a|A|181
9JPP|1|a|A|182
9JPP|1|a|C|183
*
9JPP|1|a|G|214
9JPP|1|a|G|215
9JPP|1|a|A|216
9JPP|1|a|A|217
9JPP|1|a|A|218
9JPP|1|a|A|219
9JPP|1|a|G|220
9JPP|1|a|A|221
9JPP|1|a|A|222
9JPP|1|a|A|223
9JPP|1|a|U|224
*
9JPP|1|a|A|231
9JPP|1|a|G|232
9JPP|1|a|A|233
9JPP|1|a|U|234
9JPP|1|a|U|235
*
9JPP|1|a|A|262
9JPP|1|a|G|263
9JPP|1|a|C|264
9JPP|1|a|A|265
9JPP|1|a|G|266
*
9JPP|1|a|C|426
9JPP|1|a|U|427
9JPP|1|a|A|428
9JPP|1|a|A|429
9JPP|1|a|A|430
9JPP|1|a|U|431
9JPP|1|a|A|432
9JPP|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34