J6_9K0Z_001

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GC*GGAAC*GGAAGAGAAAA*UGAUU*AGGAUG*CUGAAUAC

Length

37 nucleotides

Bulged bases

9K0Z|1|h|A|222, 9K0Z|1|h|U|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K0Z|1|h|G|42
9K0Z|1|h|C|43
*
9K0Z|1|h|G|178
9K0Z|1|h|G|179
9K0Z|1|h|A|180
9K0Z|1|h|A|181
9K0Z|1|h|C|182
*
9K0Z|1|h|G|213
9K0Z|1|h|G|214
9K0Z|1|h|A|215
9K0Z|1|h|A|216
9K0Z|1|h|G|217
9K0Z|1|h|A|218
9K0Z|1|h|G|219
9K0Z|1|h|A|220
9K0Z|1|h|A|221
9K0Z|1|h|A|222
9K0Z|1|h|A|223
*
9K0Z|1|h|U|231
9K0Z|1|h|G|232
9K0Z|1|h|A|233
9K0Z|1|h|U|234
9K0Z|1|h|U|235
*
9K0Z|1|h|A|262
9K0Z|1|h|G|263
9K0Z|1|h|G|264
9K0Z|1|h|A|265
9K0Z|1|h|U|266
9K0Z|1|h|G|267
*
9K0Z|1|h|C|514
9K0Z|1|h|U|515
9K0Z|1|h|G|516
9K0Z|1|h|A|517
9K0Z|1|h|A|518
9K0Z|1|h|U|519
9K0Z|1|h|A|520
9K0Z|1|h|C|521

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein bL34