J6_9K10_002
3D structure
- PDB id
- 9K10 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 50S ribosome subunit complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUCA*UUUA*UG*CGCC*GACUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 9K10|1|A|C|2299, 9K10|1|A|U|2614, 9K10|1|A|G|2652, 9K10|1|A|A|2654, 9K10|1|A|U|2655
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9K10|1|A|U|2297
9K10|1|A|U|2298
9K10|1|A|C|2299
9K10|1|A|A|2300
*
9K10|1|A|U|2467
9K10|1|A|U|2468
9K10|1|A|U|2469
9K10|1|A|A|2470
*
9K10|1|A|U|2482
9K10|1|A|G|2483
*
9K10|1|A|C|2505
9K10|1|A|G|2506
9K10|1|A|C|2507
9K10|1|A|C|2508
*
9K10|1|A|G|2608
9K10|1|A|A|2609
9K10|1|A|C|2610
9K10|1|A|U|2611
9K10|1|A|A|2612
9K10|1|A|G|2613
9K10|1|A|U|2614
9K10|1|A|G|2615
9K10|1|A|A|2616
9K10|1|A|U|2617
9K10|1|A|C|2618
9K10|1|A|C|2619
*
9K10|1|A|G|2645
9K10|1|A|C|2646
9K10|1|A|U|2647
9K10|1|A|C|2648
9K10|1|A|A|2649
9K10|1|A|A|2650
9K10|1|A|C|2651
9K10|1|A|G|2652
9K10|1|A|G|2653
9K10|1|A|A|2654
9K10|1|A|U|2655
9K10|1|A|A|2656
9K10|1|A|A|2657
9K10|1|A|A|2658
9K10|1|A|A|2659
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain M
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L27
- Chain Y
- 50S ribosomal protein L28
- Chain c
- 50S ribosomal protein L33 1
- Chain e
- 50S ribosomal protein L35
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