J6_9K9G_001

3D structure

PDB id

9K9G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Anabaena tRNA(Leu) precursor at Apo state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.38 Å

Loop

Sequence

ACUUAAAUAAUUGAGC*GGAUGCUCUCAAACU*AG*UGCAGAG*CCAA*UGAAAAU

Length

51 nucleotides

Bulged bases

9K9G|1|A|U|41, 9K9G|1|A|U|42, 9K9G|1|A|G|71, 9K9G|1|A|A|80

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K9G|1|A|A|31
9K9G|1|A|C|32
9K9G|1|A|U|33
9K9G|1|A|U|34
9K9G|1|A|A|35
9K9G|1|A|A|36
9K9G|1|A|A|37
9K9G|1|A|U|38
9K9G|1|A|A|39
9K9G|1|A|A|40
9K9G|1|A|U|41
9K9G|1|A|U|42
9K9G|1|A|G|43
9K9G|1|A|A|44
9K9G|1|A|G|45
9K9G|1|A|C|46
*
9K9G|1|A|G|70
9K9G|1|A|G|71
9K9G|1|A|A|72
9K9G|1|A|U|73
9K9G|1|A|G|74
9K9G|1|A|C|75
9K9G|1|A|U|76
9K9G|1|A|C|77
9K9G|1|A|U|78
9K9G|1|A|C|79
9K9G|1|A|A|80
9K9G|1|A|A|81
9K9G|1|A|A|82
9K9G|1|A|C|83
9K9G|1|A|U|84
*
9K9G|1|A|A|124
9K9G|1|A|G|125
*
9K9G|1|A|U|184
9K9G|1|A|G|185
9K9G|1|A|C|186
9K9G|1|A|A|187
9K9G|1|A|G|188
9K9G|1|A|A|189
9K9G|1|A|G|190
*
9K9G|1|A|C|238
9K9G|1|A|C|239
9K9G|1|A|A|240
9K9G|1|A|A|241
*
9K9G|1|A|U|282
9K9G|1|A|G|283
9K9G|1|A|A|284
9K9G|1|A|A|285
9K9G|1|A|A|286
9K9G|1|A|A|287
9K9G|1|A|U|288

Current chains

Chain A

RNA (334-MER)

Nearby chains