J6_9KDU_001
3D structure
- PDB id
- 9KDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 9KDU|1|L5|A|66, 9KDU|1|L8|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDU|1|L5|G|21
9KDU|1|L5|G|22
9KDU|1|L5|C|23
9KDU|1|L5|G|24
9KDU|1|L5|A|25
9KDU|1|L5|C|26
*
9KDU|1|L5|G|57
9KDU|1|L5|G|58
9KDU|1|L5|A|59
9KDU|1|L5|A|60
9KDU|1|L5|A|61
9KDU|1|L5|A|62
9KDU|1|L5|G|63
9KDU|1|L5|A|64
9KDU|1|L5|A|65
9KDU|1|L5|A|66
9KDU|1|L5|C|67
*
9KDU|1|L5|G|74
9KDU|1|L5|G|75
9KDU|1|L5|A|76
9KDU|1|L5|U|77
9KDU|1|L5|U|78
*
9KDU|1|L5|A|105
9KDU|1|L5|A|106
9KDU|1|L5|G|107
9KDU|1|L5|A|108
9KDU|1|L5|G|109
*
9KDU|1|L5|C|331
9KDU|1|L5|U|332
9KDU|1|L5|A|333
9KDU|1|L5|A|334
9KDU|1|L5|A|335
9KDU|1|L5|U|336
9KDU|1|L5|A|337
9KDU|1|L5|C|338
*
9KDU|1|L8|G|33
9KDU|1|L8|U|34
9KDU|1|L8|C|35
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
- Chain L8
- Mus musculus 5.8S ribosomal RNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LN
- Large ribosomal subunit protein eL15
- Chain Lh
- Large ribosomal subunit protein uL29
- Chain Li
- Large ribosomal subunit protein eL36
- Chain Lj
- Large ribosomal subunit protein eL37
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