J6_9KDW_002
3D structure
- PDB id
- 9KDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 9KDW|1|L5|C|1315, 9KDW|1|L5|G|1316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDW|1|L5|C|1167
9KDW|1|L5|G|1168
9KDW|1|L5|A|1169
9KDW|1|L5|G|1170
*
9KDW|1|L5|C|1199
9KDW|1|L5|G|1200
9KDW|1|L5|C|1201
9KDW|1|L5|A|1202
9KDW|1|L5|A|1203
*
9KDW|1|L5|U|1210
9KDW|1|L5|G|1211
9KDW|1|L5|A|1212
9KDW|1|L5|A|1213
9KDW|1|L5|G|1214
*
9KDW|1|L5|C|1232
9KDW|1|L5|G|1233
9KDW|1|L5|A|1234
9KDW|1|L5|G|1235
*
9KDW|1|L5|C|1278
9KDW|1|L5|G|1279
9KDW|1|L5|G|1280
*
9KDW|1|L5|C|1313
9KDW|1|L5|A|1314
9KDW|1|L5|C|1315
9KDW|1|L5|G|1316
9KDW|1|L5|A|1317
9KDW|1|L5|G|1318
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LQ
- Large ribosomal subunit protein eL18
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Li
- Large ribosomal subunit protein eL36
Coloring options: