J6_9MNC_001
3D structure
- PDB id
- 9MNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to small molecule SW393071
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GUC*GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC
- Length
- 38 nucleotides
- Bulged bases
- 9MNC|1|L1|U|34, 9MNC|1|L5|A|66
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9MNC|1|L1|G|33
9MNC|1|L1|U|34
9MNC|1|L1|C|35
*
9MNC|1|L5|G|21
9MNC|1|L5|G|22
9MNC|1|L5|C|23
9MNC|1|L5|G|24
9MNC|1|L5|A|25
9MNC|1|L5|C|26
*
9MNC|1|L5|G|57
9MNC|1|L5|G|58
9MNC|1|L5|A|59
9MNC|1|L5|G|60
9MNC|1|L5|A|61
9MNC|1|L5|A|62
9MNC|1|L5|G|63
9MNC|1|L5|A|64
9MNC|1|L5|A|65
9MNC|1|L5|A|66
9MNC|1|L5|C|67
*
9MNC|1|L5|G|74
9MNC|1|L5|G|75
9MNC|1|L5|A|76
9MNC|1|L5|U|77
9MNC|1|L5|U|78
*
9MNC|1|L5|A|105
9MNC|1|L5|A|106
9MNC|1|L5|G|107
9MNC|1|L5|A|108
9MNC|1|L5|G|109
*
9MNC|1|L5|C|332
9MNC|1|L5|U|333
9MNC|1|L5|A|334
9MNC|1|L5|A|335
9MNC|1|L5|A|336
9MNC|1|L5|U|337
9MNC|1|L5|A|338
9MNC|1|L5|C|339
Current chains
- Chain L1
- 5.8S rRNA
- Chain L5
- 28S rRNA
Nearby chains
- Chain LN
- Large ribosomal subunit protein eL15
- Chain LO
- Large ribosomal subunit protein uL29
- Chain LP
- Large ribosomal subunit protein eL37
- Chain LQ
- Large ribosomal subunit protein eL13
- Chain Li
- Large ribosomal subunit protein eL36
Coloring options: