Loop J6_9MNC

3D structure

PDB id: 9MNC (explore in PDB, NAKB, or RNA 3D Hub)
Description: Human 80S ribosome bound to small molecule SW393071
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.33 Å

Loop

Sequence: (PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUCACGAUCC*(OMG)GUGUCAGAAAA
Length: 38 nucleotides
Bulged bases: 9MNC|1|L5|G|3922, 9MNC|1|L5|C|4337, 9MNC|1|L5|A|4376, 9MNC|1|L5|A|4378, 9MNC|1|L5|A|4379
QA status: Modified nucleotides: PSU, OMU, OMG

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9MNC|1|L5|PSU|3920
9MNC|1|L5|U|3921
9MNC|1|L5|G|3922
9MNC|1|L5|A|3923
*
9MNC|1|L5|U|4188
9MNC|1|L5|U|4189
9MNC|1|L5|U|4190
9MNC|1|L5|G|4191
*
9MNC|1|L5|C|4204
9MNC|1|L5|A|4205
*
9MNC|1|L5|OMU|4227
9MNC|1|L5|OMG|4228
9MNC|1|L5|U|4229
9MNC|1|L5|C|4230
*
9MNC|1|L5|G|4331
9MNC|1|L5|C|4332
9MNC|1|L5|C|4333
9MNC|1|L5|U|4334
9MNC|1|L5|C|4335
9MNC|1|L5|A|4336
9MNC|1|L5|C|4337
9MNC|1|L5|G|4338
9MNC|1|L5|A|4339
9MNC|1|L5|U|4340
9MNC|1|L5|C|4341
9MNC|1|L5|C|4342
*
9MNC|1|L5|OMG|4370
9MNC|1|L5|G|4371
9MNC|1|L5|U|4372
9MNC|1|L5|G|4373
9MNC|1|L5|U|4374
9MNC|1|L5|C|4375
9MNC|1|L5|A|4376
9MNC|1|L5|G|4377
9MNC|1|L5|A|4378
9MNC|1|L5|A|4379
9MNC|1|L5|A|4380
9MNC|1|L5|A|4381

Current chains

Chain L5: 28S rRNA

Nearby chains

Chain LD: Large ribosomal subunit protein uL2
Chain LN: Large ribosomal subunit protein eL15
Chain LT: Large ribosomal subunit protein eL21
Chain La: Large ribosomal subunit protein uL15
Chain Lb: Large ribosomal subunit protein eL29
Chain Le: Large ribosomal subunit protein eL42
Chain Lj: Large ribosomal subunit protein eL18

J6_9MNC_003