J6_9MR4_003

3D structure

PDB id

9MR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC: Ribosome nascent chain complex(Oxa1L)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA

Length

38 nucleotides

Bulged bases

9MR4|1|5|G|3922, 9MR4|1|5|A|4376, 9MR4|1|5|A|4378, 9MR4|1|5|A|4379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MR4|1|5|U|3920
9MR4|1|5|U|3921
9MR4|1|5|G|3922
9MR4|1|5|A|3923
*
9MR4|1|5|U|4188
9MR4|1|5|U|4189
9MR4|1|5|U|4190
9MR4|1|5|G|4191
*
9MR4|1|5|C|4204
9MR4|1|5|A|4205
*
9MR4|1|5|U|4227
9MR4|1|5|G|4228
9MR4|1|5|U|4229
9MR4|1|5|C|4230
*
9MR4|1|5|G|4331
9MR4|1|5|C|4332
9MR4|1|5|C|4333
9MR4|1|5|U|4334
9MR4|1|5|C|4335
9MR4|1|5|A|4336
9MR4|1|5|C|4337
9MR4|1|5|G|4338
9MR4|1|5|A|4339
9MR4|1|5|U|4340
9MR4|1|5|C|4341
9MR4|1|5|C|4342
*
9MR4|1|5|G|4370
9MR4|1|5|G|4371
9MR4|1|5|U|4372
9MR4|1|5|G|4373
9MR4|1|5|U|4374
9MR4|1|5|C|4375
9MR4|1|5|A|4376
9MR4|1|5|G|4377
9MR4|1|5|A|4378
9MR4|1|5|A|4379
9MR4|1|5|A|4380
9MR4|1|5|A|4381

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain N

Ribosomal protein L15

Chain Q

Large ribosomal subunit protein eL18

Chain T

eL21

Chain a

60S ribosomal protein L27a

Chain b

Large ribosomal subunit protein eL29

Chain o

Large ribosomal subunit protein eL42