J6_9MTP_001

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

9MTP|1|1A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTP|1|1A|G|44
9MTP|1|1A|C|45
*
9MTP|1|1A|G|179
9MTP|1|1A|G|180
9MTP|1|1A|A|181
9MTP|1|1A|A|182
9MTP|1|1A|C|183
*
9MTP|1|1A|G|214
9MTP|1|1A|G|215
9MTP|1|1A|A|216
9MTP|1|1A|G|217
9MTP|1|1A|A|218
9MTP|1|1A|G|219
9MTP|1|1A|G|220
9MTP|1|1A|A|221
9MTP|1|1A|A|222
9MTP|1|1A|A|223
9MTP|1|1A|G|224
*
9MTP|1|1A|C|231
9MTP|1|1A|G|232
9MTP|1|1A|A|233
9MTP|1|1A|C|234
9MTP|1|1A|U|235
*
9MTP|1|1A|A|262
9MTP|1|1A|C|263
9MTP|1|1A|C|264
9MTP|1|1A|A|265
9MTP|1|1A|G|266
*
9MTP|1|1A|C|426
9MTP|1|1A|U|427
9MTP|1|1A|A|428
9MTP|1|1A|A|429
9MTP|1|1A|G|430
9MTP|1|1A|U|431
9MTP|1|1A|A|432
9MTP|1|1A|C|433

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34