J6_9N2C_001

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9N2C|1|23|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N2C|1|23|G|45
9N2C|1|23|G|46
*
9N2C|1|23|C|179
9N2C|1|23|G|180
9N2C|1|23|A|181
9N2C|1|23|A|182
9N2C|1|23|C|183
*
9N2C|1|23|G|214
9N2C|1|23|G|215
9N2C|1|23|A|216
9N2C|1|23|A|217
9N2C|1|23|A|218
9N2C|1|23|A|219
9N2C|1|23|G|220
9N2C|1|23|A|221
9N2C|1|23|A|222
9N2C|1|23|A|223
9N2C|1|23|U|224
*
9N2C|1|23|A|231
9N2C|1|23|G|232
9N2C|1|23|A|233
9N2C|1|23|U|234
9N2C|1|23|U|235
*
9N2C|1|23|A|262
9N2C|1|23|G|263
9N2C|1|23|C|264
9N2C|1|23|A|265
9N2C|1|23|G|266
*
9N2C|1|23|C|426
9N2C|1|23|U|427
9N2C|1|23|A|428
9N2C|1|23|A|429
9N2C|1|23|A|430
9N2C|1|23|U|431
9N2C|1|23|A|432
9N2C|1|23|C|433

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain Lh

50S ribosomal protein L34