J6_9NJF_001

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9NJF|1|R1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJF|1|R1|G|45
9NJF|1|R1|G|46
*
9NJF|1|R1|C|179
9NJF|1|R1|G|180
9NJF|1|R1|A|181
9NJF|1|R1|A|182
9NJF|1|R1|C|183
*
9NJF|1|R1|G|214
9NJF|1|R1|G|215
9NJF|1|R1|A|216
9NJF|1|R1|A|217
9NJF|1|R1|A|218
9NJF|1|R1|A|219
9NJF|1|R1|G|220
9NJF|1|R1|A|221
9NJF|1|R1|A|222
9NJF|1|R1|A|223
9NJF|1|R1|U|224
*
9NJF|1|R1|A|231
9NJF|1|R1|G|232
9NJF|1|R1|A|233
9NJF|1|R1|U|234
9NJF|1|R1|U|235
*
9NJF|1|R1|A|262
9NJF|1|R1|G|263
9NJF|1|R1|C|264
9NJF|1|R1|A|265
9NJF|1|R1|G|266
*
9NJF|1|R1|C|426
9NJF|1|R1|U|427
9NJF|1|R1|A|428
9NJF|1|R1|A|429
9NJF|1|R1|A|430
9NJF|1|R1|U|431
9NJF|1|R1|A|432
9NJF|1|R1|C|433

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34