J6_9NJF_002
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 9NJF|1|R1|U|2076, 9NJF|1|R1|A|2388, 9NJF|1|R1|U|2390, 9NJF|1|R1|G|2428, 9NJF|1|R1|A|2430, 9NJF|1|R1|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9NJF|1|R1|U|2074
9NJF|1|R1|U|2075
9NJF|1|R1|U|2076
9NJF|1|R1|A|2077
*
9NJF|1|R1|U|2243
9NJF|1|R1|U|2244
9NJF|1|R1|U|2245
9NJF|1|R1|G|2246
*
9NJF|1|R1|C|2258
9NJF|1|R1|U|2259
*
9NJF|1|R1|A|2281
9NJF|1|R1|G|2282
9NJF|1|R1|C|2283
9NJF|1|R1|A|2284
*
9NJF|1|R1|U|2384
9NJF|1|R1|C|2385
9NJF|1|R1|A|2386
9NJF|1|R1|U|2387
9NJF|1|R1|A|2388
9NJF|1|R1|G|2389
9NJF|1|R1|U|2390
9NJF|1|R1|G|2391
9NJF|1|R1|A|2392
9NJF|1|R1|U|2393
9NJF|1|R1|C|2394
9NJF|1|R1|C|2395
*
9NJF|1|R1|G|2421
9NJF|1|R1|C|2422
9NJF|1|R1|U|2423
9NJF|1|R1|C|2424
9NJF|1|R1|A|2425
9NJF|1|R1|A|2426
9NJF|1|R1|C|2427
9NJF|1|R1|G|2428
9NJF|1|R1|G|2429
9NJF|1|R1|A|2430
9NJF|1|R1|U|2431
9NJF|1|R1|A|2432
9NJF|1|R1|A|2433
9NJF|1|R1|A|2434
9NJF|1|R1|A|2435
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L15
- Chain 2
- 50S ribosomal protein L2
- Chain 27
- 50S ribosomal protein L27
- Chain 28
- 50S ribosomal protein L28
- Chain 33
- Large ribosomal subunit protein bL33
- Chain 35
- Large ribosomal subunit protein bL35
- Chain Y
- Probable ATP-binding protein YbiT
Coloring options: