J6_9NKL_001

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9NKL|1|R1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NKL|1|R1|G|45
9NKL|1|R1|G|46
*
9NKL|1|R1|C|179
9NKL|1|R1|G|180
9NKL|1|R1|A|181
9NKL|1|R1|A|182
9NKL|1|R1|C|183
*
9NKL|1|R1|G|214
9NKL|1|R1|G|215
9NKL|1|R1|A|216
9NKL|1|R1|A|217
9NKL|1|R1|A|218
9NKL|1|R1|A|219
9NKL|1|R1|G|220
9NKL|1|R1|A|221
9NKL|1|R1|A|222
9NKL|1|R1|A|223
9NKL|1|R1|U|224
*
9NKL|1|R1|A|231
9NKL|1|R1|G|232
9NKL|1|R1|A|233
9NKL|1|R1|U|234
9NKL|1|R1|U|235
*
9NKL|1|R1|A|262
9NKL|1|R1|G|263
9NKL|1|R1|C|264
9NKL|1|R1|A|265
9NKL|1|R1|G|266
*
9NKL|1|R1|C|426
9NKL|1|R1|U|427
9NKL|1|R1|A|428
9NKL|1|R1|A|429
9NKL|1|R1|A|430
9NKL|1|R1|U|431
9NKL|1|R1|A|432
9NKL|1|R1|C|433

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34