J6_9NL5_001

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9NL5|1|R1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL5|1|R1|G|45
9NL5|1|R1|G|46
*
9NL5|1|R1|C|179
9NL5|1|R1|G|180
9NL5|1|R1|A|181
9NL5|1|R1|A|182
9NL5|1|R1|C|183
*
9NL5|1|R1|G|214
9NL5|1|R1|G|215
9NL5|1|R1|A|216
9NL5|1|R1|A|217
9NL5|1|R1|A|218
9NL5|1|R1|A|219
9NL5|1|R1|G|220
9NL5|1|R1|A|221
9NL5|1|R1|A|222
9NL5|1|R1|A|223
9NL5|1|R1|U|224
*
9NL5|1|R1|A|231
9NL5|1|R1|G|232
9NL5|1|R1|A|233
9NL5|1|R1|U|234
9NL5|1|R1|U|235
*
9NL5|1|R1|A|262
9NL5|1|R1|G|263
9NL5|1|R1|C|264
9NL5|1|R1|A|265
9NL5|1|R1|G|266
*
9NL5|1|R1|C|426
9NL5|1|R1|U|427
9NL5|1|R1|A|428
9NL5|1|R1|A|429
9NL5|1|R1|A|430
9NL5|1|R1|U|431
9NL5|1|R1|A|432
9NL5|1|R1|C|433

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34