J6_9NL6_001

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9NL6|1|R1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL6|1|R1|G|45
9NL6|1|R1|G|46
*
9NL6|1|R1|C|179
9NL6|1|R1|G|180
9NL6|1|R1|A|181
9NL6|1|R1|A|182
9NL6|1|R1|C|183
*
9NL6|1|R1|G|214
9NL6|1|R1|G|215
9NL6|1|R1|A|216
9NL6|1|R1|A|217
9NL6|1|R1|A|218
9NL6|1|R1|A|219
9NL6|1|R1|G|220
9NL6|1|R1|A|221
9NL6|1|R1|A|222
9NL6|1|R1|A|223
9NL6|1|R1|U|224
*
9NL6|1|R1|A|231
9NL6|1|R1|G|232
9NL6|1|R1|A|233
9NL6|1|R1|U|234
9NL6|1|R1|U|235
*
9NL6|1|R1|A|262
9NL6|1|R1|G|263
9NL6|1|R1|C|264
9NL6|1|R1|A|265
9NL6|1|R1|G|266
*
9NL6|1|R1|C|426
9NL6|1|R1|U|427
9NL6|1|R1|A|428
9NL6|1|R1|A|429
9NL6|1|R1|A|430
9NL6|1|R1|U|431
9NL6|1|R1|A|432
9NL6|1|R1|C|433

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34