J6_9NL6_002
3D structure
- PDB id
- 9NL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 9NL6|1|R1|U|2076, 9NL6|1|R1|A|2388, 9NL6|1|R1|U|2390, 9NL6|1|R1|G|2428, 9NL6|1|R1|A|2430, 9NL6|1|R1|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9NL6|1|R1|U|2074
9NL6|1|R1|U|2075
9NL6|1|R1|U|2076
9NL6|1|R1|A|2077
*
9NL6|1|R1|U|2243
9NL6|1|R1|U|2244
9NL6|1|R1|U|2245
9NL6|1|R1|G|2246
*
9NL6|1|R1|C|2258
9NL6|1|R1|U|2259
*
9NL6|1|R1|A|2281
9NL6|1|R1|G|2282
9NL6|1|R1|C|2283
9NL6|1|R1|A|2284
*
9NL6|1|R1|U|2384
9NL6|1|R1|C|2385
9NL6|1|R1|A|2386
9NL6|1|R1|U|2387
9NL6|1|R1|A|2388
9NL6|1|R1|G|2389
9NL6|1|R1|U|2390
9NL6|1|R1|G|2391
9NL6|1|R1|A|2392
9NL6|1|R1|U|2393
9NL6|1|R1|C|2394
9NL6|1|R1|C|2395
*
9NL6|1|R1|G|2421
9NL6|1|R1|C|2422
9NL6|1|R1|U|2423
9NL6|1|R1|C|2424
9NL6|1|R1|A|2425
9NL6|1|R1|A|2426
9NL6|1|R1|C|2427
9NL6|1|R1|G|2428
9NL6|1|R1|G|2429
9NL6|1|R1|A|2430
9NL6|1|R1|U|2431
9NL6|1|R1|A|2432
9NL6|1|R1|A|2433
9NL6|1|R1|A|2434
9NL6|1|R1|A|2435
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 15
- Large ribosomal subunit protein uL15
- Chain 2
- 50S ribosomal protein L2
- Chain 27
- 50S ribosomal protein L27
- Chain 28
- 50S ribosomal protein L28
- Chain 35
- Large ribosomal subunit protein bL35
- Chain Y
- Probable ATP-binding protein YbiT
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