J6_9NL7_001

3D structure

PDB id

9NL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9NL7|1|R1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL7|1|R1|G|45
9NL7|1|R1|G|46
*
9NL7|1|R1|C|179
9NL7|1|R1|G|180
9NL7|1|R1|A|181
9NL7|1|R1|A|182
9NL7|1|R1|C|183
*
9NL7|1|R1|G|214
9NL7|1|R1|G|215
9NL7|1|R1|A|216
9NL7|1|R1|A|217
9NL7|1|R1|A|218
9NL7|1|R1|A|219
9NL7|1|R1|G|220
9NL7|1|R1|A|221
9NL7|1|R1|A|222
9NL7|1|R1|A|223
9NL7|1|R1|U|224
*
9NL7|1|R1|A|231
9NL7|1|R1|G|232
9NL7|1|R1|A|233
9NL7|1|R1|U|234
9NL7|1|R1|U|235
*
9NL7|1|R1|A|262
9NL7|1|R1|G|263
9NL7|1|R1|C|264
9NL7|1|R1|A|265
9NL7|1|R1|G|266
*
9NL7|1|R1|C|426
9NL7|1|R1|U|427
9NL7|1|R1|A|428
9NL7|1|R1|A|429
9NL7|1|R1|A|430
9NL7|1|R1|U|431
9NL7|1|R1|A|432
9NL7|1|R1|C|433

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34