J6_9NLB_001

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9NLB|1|R1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLB|1|R1|G|45
9NLB|1|R1|G|46
*
9NLB|1|R1|C|179
9NLB|1|R1|G|180
9NLB|1|R1|A|181
9NLB|1|R1|A|182
9NLB|1|R1|C|183
*
9NLB|1|R1|G|214
9NLB|1|R1|G|215
9NLB|1|R1|A|216
9NLB|1|R1|A|217
9NLB|1|R1|A|218
9NLB|1|R1|A|219
9NLB|1|R1|G|220
9NLB|1|R1|A|221
9NLB|1|R1|A|222
9NLB|1|R1|A|223
9NLB|1|R1|U|224
*
9NLB|1|R1|A|231
9NLB|1|R1|G|232
9NLB|1|R1|A|233
9NLB|1|R1|U|234
9NLB|1|R1|U|235
*
9NLB|1|R1|A|262
9NLB|1|R1|G|263
9NLB|1|R1|C|264
9NLB|1|R1|A|265
9NLB|1|R1|G|266
*
9NLB|1|R1|C|426
9NLB|1|R1|U|427
9NLB|1|R1|A|428
9NLB|1|R1|A|429
9NLB|1|R1|A|430
9NLB|1|R1|U|431
9NLB|1|R1|A|432
9NLB|1|R1|C|433

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34