J6_9NLE_001

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9NLE|1|R1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLE|1|R1|G|45
9NLE|1|R1|G|46
*
9NLE|1|R1|C|179
9NLE|1|R1|G|180
9NLE|1|R1|A|181
9NLE|1|R1|A|182
9NLE|1|R1|C|183
*
9NLE|1|R1|G|214
9NLE|1|R1|G|215
9NLE|1|R1|A|216
9NLE|1|R1|A|217
9NLE|1|R1|A|218
9NLE|1|R1|A|219
9NLE|1|R1|G|220
9NLE|1|R1|A|221
9NLE|1|R1|A|222
9NLE|1|R1|A|223
9NLE|1|R1|U|224
*
9NLE|1|R1|A|231
9NLE|1|R1|G|232
9NLE|1|R1|A|233
9NLE|1|R1|U|234
9NLE|1|R1|U|235
*
9NLE|1|R1|A|262
9NLE|1|R1|G|263
9NLE|1|R1|C|264
9NLE|1|R1|A|265
9NLE|1|R1|G|266
*
9NLE|1|R1|C|426
9NLE|1|R1|U|427
9NLE|1|R1|A|428
9NLE|1|R1|A|429
9NLE|1|R1|A|430
9NLE|1|R1|U|431
9NLE|1|R1|A|432
9NLE|1|R1|C|433

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34