J6_9NLF_001

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9NLF|1|R1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLF|1|R1|G|45
9NLF|1|R1|G|46
*
9NLF|1|R1|C|179
9NLF|1|R1|G|180
9NLF|1|R1|A|181
9NLF|1|R1|A|182
9NLF|1|R1|C|183
*
9NLF|1|R1|G|214
9NLF|1|R1|G|215
9NLF|1|R1|A|216
9NLF|1|R1|A|217
9NLF|1|R1|A|218
9NLF|1|R1|A|219
9NLF|1|R1|G|220
9NLF|1|R1|A|221
9NLF|1|R1|A|222
9NLF|1|R1|A|223
9NLF|1|R1|U|224
*
9NLF|1|R1|A|231
9NLF|1|R1|G|232
9NLF|1|R1|A|233
9NLF|1|R1|U|234
9NLF|1|R1|U|235
*
9NLF|1|R1|A|262
9NLF|1|R1|G|263
9NLF|1|R1|C|264
9NLF|1|R1|A|265
9NLF|1|R1|G|266
*
9NLF|1|R1|C|426
9NLF|1|R1|U|427
9NLF|1|R1|A|428
9NLF|1|R1|A|429
9NLF|1|R1|A|430
9NLF|1|R1|U|431
9NLF|1|R1|A|432
9NLF|1|R1|C|433

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34