J6_9NLH_001

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9NLH|1|R1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLH|1|R1|G|45
9NLH|1|R1|G|46
*
9NLH|1|R1|C|179
9NLH|1|R1|G|180
9NLH|1|R1|A|181
9NLH|1|R1|A|182
9NLH|1|R1|C|183
*
9NLH|1|R1|G|214
9NLH|1|R1|G|215
9NLH|1|R1|A|216
9NLH|1|R1|A|217
9NLH|1|R1|A|218
9NLH|1|R1|A|219
9NLH|1|R1|G|220
9NLH|1|R1|A|221
9NLH|1|R1|A|222
9NLH|1|R1|A|223
9NLH|1|R1|U|224
*
9NLH|1|R1|A|231
9NLH|1|R1|G|232
9NLH|1|R1|A|233
9NLH|1|R1|U|234
9NLH|1|R1|U|235
*
9NLH|1|R1|A|262
9NLH|1|R1|G|263
9NLH|1|R1|C|264
9NLH|1|R1|A|265
9NLH|1|R1|G|266
*
9NLH|1|R1|C|426
9NLH|1|R1|U|427
9NLH|1|R1|A|428
9NLH|1|R1|A|429
9NLH|1|R1|A|430
9NLH|1|R1|U|431
9NLH|1|R1|A|432
9NLH|1|R1|C|433

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34