J6_9NLJ_001

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9NLJ|1|R1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R1|G|45
9NLJ|1|R1|G|46
*
9NLJ|1|R1|C|179
9NLJ|1|R1|G|180
9NLJ|1|R1|A|181
9NLJ|1|R1|A|182
9NLJ|1|R1|C|183
*
9NLJ|1|R1|G|214
9NLJ|1|R1|G|215
9NLJ|1|R1|A|216
9NLJ|1|R1|A|217
9NLJ|1|R1|A|218
9NLJ|1|R1|A|219
9NLJ|1|R1|G|220
9NLJ|1|R1|A|221
9NLJ|1|R1|A|222
9NLJ|1|R1|A|223
9NLJ|1|R1|U|224
*
9NLJ|1|R1|A|231
9NLJ|1|R1|G|232
9NLJ|1|R1|A|233
9NLJ|1|R1|U|234
9NLJ|1|R1|U|235
*
9NLJ|1|R1|A|262
9NLJ|1|R1|G|263
9NLJ|1|R1|C|264
9NLJ|1|R1|A|265
9NLJ|1|R1|G|266
*
9NLJ|1|R1|C|426
9NLJ|1|R1|U|427
9NLJ|1|R1|A|428
9NLJ|1|R1|A|429
9NLJ|1|R1|A|430
9NLJ|1|R1|U|431
9NLJ|1|R1|A|432
9NLJ|1|R1|C|433

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34