J6_9NLQ_001

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9NLQ|1|R1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLQ|1|R1|G|45
9NLQ|1|R1|G|46
*
9NLQ|1|R1|C|179
9NLQ|1|R1|G|180
9NLQ|1|R1|A|181
9NLQ|1|R1|A|182
9NLQ|1|R1|C|183
*
9NLQ|1|R1|G|214
9NLQ|1|R1|G|215
9NLQ|1|R1|A|216
9NLQ|1|R1|A|217
9NLQ|1|R1|A|218
9NLQ|1|R1|A|219
9NLQ|1|R1|G|220
9NLQ|1|R1|A|221
9NLQ|1|R1|A|222
9NLQ|1|R1|A|223
9NLQ|1|R1|U|224
*
9NLQ|1|R1|A|231
9NLQ|1|R1|G|232
9NLQ|1|R1|A|233
9NLQ|1|R1|U|234
9NLQ|1|R1|U|235
*
9NLQ|1|R1|A|262
9NLQ|1|R1|G|263
9NLQ|1|R1|C|264
9NLQ|1|R1|A|265
9NLQ|1|R1|G|266
*
9NLQ|1|R1|C|426
9NLQ|1|R1|U|427
9NLQ|1|R1|A|428
9NLQ|1|R1|A|429
9NLQ|1|R1|A|430
9NLQ|1|R1|U|431
9NLQ|1|R1|A|432
9NLQ|1|R1|C|433

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34