J6_9NLS_001

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9NLS|1|R1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLS|1|R1|G|45
9NLS|1|R1|G|46
*
9NLS|1|R1|C|179
9NLS|1|R1|G|180
9NLS|1|R1|A|181
9NLS|1|R1|A|182
9NLS|1|R1|C|183
*
9NLS|1|R1|G|214
9NLS|1|R1|G|215
9NLS|1|R1|A|216
9NLS|1|R1|A|217
9NLS|1|R1|A|218
9NLS|1|R1|A|219
9NLS|1|R1|G|220
9NLS|1|R1|A|221
9NLS|1|R1|A|222
9NLS|1|R1|A|223
9NLS|1|R1|U|224
*
9NLS|1|R1|A|231
9NLS|1|R1|G|232
9NLS|1|R1|A|233
9NLS|1|R1|U|234
9NLS|1|R1|U|235
*
9NLS|1|R1|A|262
9NLS|1|R1|G|263
9NLS|1|R1|C|264
9NLS|1|R1|A|265
9NLS|1|R1|G|266
*
9NLS|1|R1|C|426
9NLS|1|R1|U|427
9NLS|1|R1|A|428
9NLS|1|R1|A|429
9NLS|1|R1|A|430
9NLS|1|R1|U|431
9NLS|1|R1|A|432
9NLS|1|R1|C|433

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34