J6_9O2X_001

3D structure

PDB id

9O2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9O2X|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O2X|1|a|G|45
9O2X|1|a|G|46
*
9O2X|1|a|C|179
9O2X|1|a|G|180
9O2X|1|a|A|181
9O2X|1|a|A|182
9O2X|1|a|C|183
*
9O2X|1|a|G|214
9O2X|1|a|G|215
9O2X|1|a|A|216
9O2X|1|a|A|217
9O2X|1|a|A|218
9O2X|1|a|A|219
9O2X|1|a|G|220
9O2X|1|a|A|221
9O2X|1|a|A|222
9O2X|1|a|A|223
9O2X|1|a|U|224
*
9O2X|1|a|A|231
9O2X|1|a|G|232
9O2X|1|a|A|233
9O2X|1|a|U|234
9O2X|1|a|U|235
*
9O2X|1|a|A|262
9O2X|1|a|G|263
9O2X|1|a|C|264
9O2X|1|a|A|265
9O2X|1|a|G|266
*
9O2X|1|a|C|426
9O2X|1|a|U|427
9O2X|1|a|A|428
9O2X|1|a|A|429
9O2X|1|a|A|430
9O2X|1|a|U|431
9O2X|1|a|A|432
9O2X|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34