J6_9O2Y_001

3D structure

PDB id

9O2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.14 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9O2Y|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O2Y|1|a|G|45
9O2Y|1|a|G|46
*
9O2Y|1|a|C|179
9O2Y|1|a|G|180
9O2Y|1|a|A|181
9O2Y|1|a|A|182
9O2Y|1|a|C|183
*
9O2Y|1|a|G|214
9O2Y|1|a|G|215
9O2Y|1|a|A|216
9O2Y|1|a|A|217
9O2Y|1|a|A|218
9O2Y|1|a|A|219
9O2Y|1|a|G|220
9O2Y|1|a|A|221
9O2Y|1|a|A|222
9O2Y|1|a|A|223
9O2Y|1|a|U|224
*
9O2Y|1|a|A|231
9O2Y|1|a|G|232
9O2Y|1|a|A|233
9O2Y|1|a|U|234
9O2Y|1|a|U|235
*
9O2Y|1|a|A|262
9O2Y|1|a|G|263
9O2Y|1|a|C|264
9O2Y|1|a|A|265
9O2Y|1|a|G|266
*
9O2Y|1|a|C|426
9O2Y|1|a|U|427
9O2Y|1|a|A|428
9O2Y|1|a|A|429
9O2Y|1|a|A|430
9O2Y|1|a|U|431
9O2Y|1|a|A|432
9O2Y|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34