J6_9O3J_004
3D structure
- PDB id
- 9O3J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 9O3J|1|2A|U|2076, 9O3J|1|2A|A|2388, 9O3J|1|2A|U|2390, 9O3J|1|2A|G|2428, 9O3J|1|2A|A|2430, 9O3J|1|2A|U|2431, 9O3J|1|2A|A|2434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9O3J|1|2A|U|2074
9O3J|1|2A|U|2075
9O3J|1|2A|U|2076
9O3J|1|2A|A|2077
*
9O3J|1|2A|U|2243
9O3J|1|2A|U|2244
9O3J|1|2A|U|2245
9O3J|1|2A|G|2246
*
9O3J|1|2A|C|2258
9O3J|1|2A|G|2259
*
9O3J|1|2A|C|2281
9O3J|1|2A|G|2282
9O3J|1|2A|C|2283
9O3J|1|2A|C|2284
*
9O3J|1|2A|G|2384
9O3J|1|2A|C|2385
9O3J|1|2A|C|2386
9O3J|1|2A|U|2387
9O3J|1|2A|A|2388
9O3J|1|2A|G|2389
9O3J|1|2A|U|2390
9O3J|1|2A|G|2391
9O3J|1|2A|A|2392
9O3J|1|2A|A|2393
9O3J|1|2A|C|2394
9O3J|1|2A|C|2395
*
9O3J|1|2A|G|2421
9O3J|1|2A|A|2422
9O3J|1|2A|U|2423
9O3J|1|2A|C|2424
9O3J|1|2A|A|2425
9O3J|1|2A|A|2426
9O3J|1|2A|C|2427
9O3J|1|2A|G|2428
9O3J|1|2A|G|2429
9O3J|1|2A|A|2430
9O3J|1|2A|U|2431
9O3J|1|2A|A|2432
9O3J|1|2A|A|2433
9O3J|1|2A|A|2434
9O3J|1|2A|A|2435
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 21
- 50S ribosomal protein L28
- Chain 26
- 50S ribosomal protein L33
- Chain 28
- 50S ribosomal protein L35
- Chain 2D
- 50S ribosomal protein L2
- Chain 2P
- 50S ribosomal protein L15
- Chain 2y
- Transfer RNA; tRNA
Coloring options: