J6_9OV8_001

3D structure

PDB id

9OV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9OV8|1|A|U|52, 9OV8|1|A|A|256, 9OV8|1|A|A|334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OV8|1|A|C|21
9OV8|1|A|G|22
9OV8|1|A|C|23
*
9OV8|1|A|G|44
9OV8|1|A|A|45
9OV8|1|A|G|46
9OV8|1|A|G|47
9OV8|1|A|A|48
9OV8|1|A|A|49
9OV8|1|A|A|50
9OV8|1|A|G|51
9OV8|1|A|U|52
9OV8|1|A|C|53
9OV8|1|A|C|54
9OV8|1|A|A|55
9OV8|1|A|U|56
9OV8|1|A|G|57
9OV8|1|A|C|58
*
9OV8|1|A|G|254
9OV8|1|A|A|255
9OV8|1|A|A|256
9OV8|1|A|A|257
9OV8|1|A|C|258
*
9OV8|1|A|G|274
9OV8|1|A|G|275
9OV8|1|A|C|276
9OV8|1|A|A|277
9OV8|1|A|C|278
*
9OV8|1|A|G|307
9OV8|1|A|A|308
*
9OV8|1|A|U|329
9OV8|1|A|A|330
9OV8|1|A|G|331
9OV8|1|A|A|332
9OV8|1|A|U|333
9OV8|1|A|A|334
9OV8|1|A|G|335
9OV8|1|A|A|336
9OV8|1|A|U|337
9OV8|1|A|G|338

Current chains

Chain A

RNase P RNA component

Nearby chains