J6_9OVB_001

3D structure

PDB id

9OVB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in 5 mM Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9OVB|1|A|U|52, 9OVB|1|A|A|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OVB|1|A|C|21
9OVB|1|A|G|22
9OVB|1|A|C|23
*
9OVB|1|A|G|44
9OVB|1|A|A|45
9OVB|1|A|G|46
9OVB|1|A|G|47
9OVB|1|A|A|48
9OVB|1|A|A|49
9OVB|1|A|A|50
9OVB|1|A|G|51
9OVB|1|A|U|52
9OVB|1|A|C|53
9OVB|1|A|C|54
9OVB|1|A|A|55
9OVB|1|A|U|56
9OVB|1|A|G|57
9OVB|1|A|C|58
*
9OVB|1|A|G|254
9OVB|1|A|A|255
9OVB|1|A|A|256
9OVB|1|A|A|257
9OVB|1|A|C|258
*
9OVB|1|A|G|274
9OVB|1|A|G|275
9OVB|1|A|C|276
9OVB|1|A|A|277
9OVB|1|A|C|278
*
9OVB|1|A|G|307
9OVB|1|A|A|308
*
9OVB|1|A|U|329
9OVB|1|A|A|330
9OVB|1|A|G|331
9OVB|1|A|A|332
9OVB|1|A|U|333
9OVB|1|A|A|334
9OVB|1|A|G|335
9OVB|1|A|A|336
9OVB|1|A|U|337
9OVB|1|A|G|338

Current chains

Chain A

RNase P RNA component

Nearby chains