J6_9OVC_001

3D structure

PDB id

9OVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in 10 mM Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9OVC|1|A|U|52, 9OVC|1|A|A|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OVC|1|A|C|21
9OVC|1|A|G|22
9OVC|1|A|C|23
*
9OVC|1|A|G|44
9OVC|1|A|A|45
9OVC|1|A|G|46
9OVC|1|A|G|47
9OVC|1|A|A|48
9OVC|1|A|A|49
9OVC|1|A|A|50
9OVC|1|A|G|51
9OVC|1|A|U|52
9OVC|1|A|C|53
9OVC|1|A|C|54
9OVC|1|A|A|55
9OVC|1|A|U|56
9OVC|1|A|G|57
9OVC|1|A|C|58
*
9OVC|1|A|G|254
9OVC|1|A|A|255
9OVC|1|A|A|256
9OVC|1|A|A|257
9OVC|1|A|C|258
*
9OVC|1|A|G|274
9OVC|1|A|G|275
9OVC|1|A|C|276
9OVC|1|A|A|277
9OVC|1|A|C|278
*
9OVC|1|A|G|307
9OVC|1|A|A|308
*
9OVC|1|A|U|329
9OVC|1|A|A|330
9OVC|1|A|G|331
9OVC|1|A|A|332
9OVC|1|A|U|333
9OVC|1|A|A|334
9OVC|1|A|G|335
9OVC|1|A|A|336
9OVC|1|A|U|337
9OVC|1|A|G|338

Current chains

Chain A

RNase P ribozyme

Nearby chains