J6_9OWJ_001

3D structure

PDB id

9OWJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA in 5 mM Ca2+

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GAC*GUAGAUAGAUG

Length

42 nucleotides

Bulged bases

9OWJ|1|A|U|52, 9OWJ|1|A|A|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OWJ|1|A|C|21
9OWJ|1|A|G|22
9OWJ|1|A|C|23
*
9OWJ|1|A|G|44
9OWJ|1|A|A|45
9OWJ|1|A|G|46
9OWJ|1|A|G|47
9OWJ|1|A|A|48
9OWJ|1|A|A|49
9OWJ|1|A|A|50
9OWJ|1|A|G|51
9OWJ|1|A|U|52
9OWJ|1|A|C|53
9OWJ|1|A|C|54
9OWJ|1|A|A|55
9OWJ|1|A|U|56
9OWJ|1|A|G|57
9OWJ|1|A|C|58
*
9OWJ|1|A|G|254
9OWJ|1|A|A|255
9OWJ|1|A|A|256
9OWJ|1|A|A|257
9OWJ|1|A|C|258
*
9OWJ|1|A|G|274
9OWJ|1|A|G|275
9OWJ|1|A|C|276
9OWJ|1|A|A|277
9OWJ|1|A|C|278
*
9OWJ|1|A|G|307
9OWJ|1|A|A|308
9OWJ|1|A|C|309
*
9OWJ|1|A|G|328
9OWJ|1|A|U|329
9OWJ|1|A|A|330
9OWJ|1|A|G|331
9OWJ|1|A|A|332
9OWJ|1|A|U|333
9OWJ|1|A|A|334
9OWJ|1|A|G|335
9OWJ|1|A|A|336
9OWJ|1|A|U|337
9OWJ|1|A|G|338

Current chains

Chain A

RNase P RNA component

Nearby chains

Chain C

Transfer RNA; tRNA

Chain E

Transfer RNA; tRNA