J6_9OWL_001

3D structure

PDB id

9OWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 5 mM Ca2+

Experimental method

ELECTRON MICROSCOPY

Resolution

2.99 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GAC*GUAGAUAGAUG

Length

42 nucleotides

Bulged bases

9OWL|1|A|U|52, 9OWL|1|A|A|256, 9OWL|1|A|A|334, 9OWL|1|A|G|335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OWL|1|A|C|21
9OWL|1|A|G|22
9OWL|1|A|C|23
*
9OWL|1|A|G|44
9OWL|1|A|A|45
9OWL|1|A|G|46
9OWL|1|A|G|47
9OWL|1|A|A|48
9OWL|1|A|A|49
9OWL|1|A|A|50
9OWL|1|A|G|51
9OWL|1|A|U|52
9OWL|1|A|C|53
9OWL|1|A|C|54
9OWL|1|A|A|55
9OWL|1|A|U|56
9OWL|1|A|G|57
9OWL|1|A|C|58
*
9OWL|1|A|G|254
9OWL|1|A|A|255
9OWL|1|A|A|256
9OWL|1|A|A|257
9OWL|1|A|C|258
*
9OWL|1|A|G|274
9OWL|1|A|G|275
9OWL|1|A|C|276
9OWL|1|A|A|277
9OWL|1|A|C|278
*
9OWL|1|A|G|307
9OWL|1|A|A|308
9OWL|1|A|C|309
*
9OWL|1|A|G|328
9OWL|1|A|U|329
9OWL|1|A|A|330
9OWL|1|A|G|331
9OWL|1|A|A|332
9OWL|1|A|U|333
9OWL|1|A|A|334
9OWL|1|A|G|335
9OWL|1|A|A|336
9OWL|1|A|U|337
9OWL|1|A|G|338

Current chains

Chain A

RNase P RNA component

Nearby chains

Chain C

Transfer RNA; tRNA