J6_9P8B_003
3D structure
- PDB id
- 9P8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human eEF1A-A/T-P-E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUCACGAUCC*(OMG)GUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 9P8B|1|L5|G|3922||A, 9P8B|1|L5|C|4337, 9P8B|1|L5|A|4376, 9P8B|1|L5|A|4378, 9P8B|1|L5|A|4379
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9P8B|1|L5|PSU|3920
9P8B|1|L5|U|3921
9P8B|1|L5|G|3922||A
9P8B|1|L5|A|3923
*
9P8B|1|L5|U|4188
9P8B|1|L5|U|4189
9P8B|1|L5|U|4190
9P8B|1|L5|G|4191
*
9P8B|1|L5|C|4204
9P8B|1|L5|A|4205
*
9P8B|1|L5|OMU|4227
9P8B|1|L5|OMG|4228
9P8B|1|L5|U|4229
9P8B|1|L5|C|4230
*
9P8B|1|L5|G|4331
9P8B|1|L5|C|4332
9P8B|1|L5|C|4333
9P8B|1|L5|U|4334
9P8B|1|L5|C|4335
9P8B|1|L5|A|4336
9P8B|1|L5|C|4337
9P8B|1|L5|G|4338
9P8B|1|L5|A|4339
9P8B|1|L5|U|4340
9P8B|1|L5|C|4341
9P8B|1|L5|C|4342
*
9P8B|1|L5|OMG|4370
9P8B|1|L5|G|4371
9P8B|1|L5|U|4372
9P8B|1|L5|G|4373
9P8B|1|L5|U|4374
9P8B|1|L5|C|4375
9P8B|1|L5|A|4376
9P8B|1|L5|G|4377
9P8B|1|L5|A|4378
9P8B|1|L5|A|4379
9P8B|1|L5|A|4380
9P8B|1|L5|A|4381
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Et
- Transfer RNA; tRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Lo
- 60S ribosomal protein L36a
- Chain Pt
- Transfer RNA; tRNA
Coloring options: