J6_9PBE_003
3D structure
- PDB id
- 9PBE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome (composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUCACGAUCC*(OMG)GUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 9PBE|1|L5|G|3922||A, 9PBE|1|L5|C|4337, 9PBE|1|L5|A|4376, 9PBE|1|L5|A|4378, 9PBE|1|L5|A|4379
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PBE|1|L5|PSU|3920
9PBE|1|L5|U|3921
9PBE|1|L5|G|3922||A
9PBE|1|L5|A|3923
*
9PBE|1|L5|U|4188
9PBE|1|L5|U|4189
9PBE|1|L5|U|4190
9PBE|1|L5|G|4191
*
9PBE|1|L5|C|4204
9PBE|1|L5|A|4205
*
9PBE|1|L5|OMU|4227
9PBE|1|L5|OMG|4228
9PBE|1|L5|U|4229
9PBE|1|L5|C|4230
*
9PBE|1|L5|G|4331
9PBE|1|L5|C|4332
9PBE|1|L5|C|4333
9PBE|1|L5|U|4334
9PBE|1|L5|C|4335
9PBE|1|L5|A|4336
9PBE|1|L5|C|4337
9PBE|1|L5|G|4338
9PBE|1|L5|A|4339
9PBE|1|L5|U|4340
9PBE|1|L5|C|4341
9PBE|1|L5|C|4342
*
9PBE|1|L5|OMG|4370
9PBE|1|L5|G|4371
9PBE|1|L5|U|4372
9PBE|1|L5|G|4373
9PBE|1|L5|U|4374
9PBE|1|L5|C|4375
9PBE|1|L5|A|4376
9PBE|1|L5|G|4377
9PBE|1|L5|A|4378
9PBE|1|L5|A|4379
9PBE|1|L5|A|4380
9PBE|1|L5|A|4381
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Lo
- 60S ribosomal protein L36a
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