J6_9PGM_001
3D structure
- PDB id
- 9PGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- AGAUAG*CAA*UUAG*CACUA*UUGUAG*CACACCCAAU
- Length
- 34 nucleotides
- Bulged bases
- 9PGM|1|A|U|2030, 9PGM|1|A|A|2097, 9PGM|1|A|G|2140, 9PGM|1|A|C|2262
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PGM|1|A|A|2027
9PGM|1|A|G|2028
9PGM|1|A|A|2029
9PGM|1|A|U|2030
9PGM|1|A|A|2031
9PGM|1|A|G|2032
*
9PGM|1|A|C|2043
9PGM|1|A|A|2044
9PGM|1|A|A|2045
*
9PGM|1|A|U|2095
9PGM|1|A|U|2096
9PGM|1|A|A|2097
9PGM|1|A|G|2098
*
9PGM|1|A|C|2123
9PGM|1|A|A|2124
9PGM|1|A|C|2125
9PGM|1|A|U|2126
9PGM|1|A|A|2127
*
9PGM|1|A|U|2138
9PGM|1|A|U|2139
9PGM|1|A|G|2140
9PGM|1|A|U|2141
9PGM|1|A|A|2142
9PGM|1|A|G|2143
*
9PGM|1|A|C|2257
9PGM|1|A|A|2258
9PGM|1|A|C|2259
9PGM|1|A|A|2260
9PGM|1|A|C|2261
9PGM|1|A|C|2262
9PGM|1|A|C|2263
9PGM|1|A|A|2264
9PGM|1|A|A|2265
9PGM|1|A|U|2266
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain 6
- 39S ribosomal protein L38, mitochondrial
- Chain I
- 39S ribosomal protein L10, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain N
- 39S ribosomal protein L16, mitochondrial
- Chain R
- 39S ribosomal protein L20, mitochondrial
- Chain S
- 39S ribosomal protein L21, mitochondrial
- Chain W
- 39S ribosomal protein L27, mitochondrial
- Chain Z
- 39S ribosomal protein L30, mitochondrial
- Chain i
- 39S ribosomal protein L51, mitochondrial
- Chain j
- 39S ribosomal protein L52, mitochondrial
- Chain o
- Ribosomal protein 63, mitochondrial
Coloring options: