J6_9PJ8_002
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GACUAGUGAUCU*ACUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 9PJ8|1|a|U|2258, 9PJ8|1|a|A|2570, 9PJ8|1|a|U|2572, 9PJ8|1|a|G|2610, 9PJ8|1|a|A|2612, 9PJ8|1|a|U|2613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PJ8|1|a|U|2256
9PJ8|1|a|U|2257
9PJ8|1|a|U|2258
9PJ8|1|a|A|2259
*
9PJ8|1|a|U|2425
9PJ8|1|a|U|2426
9PJ8|1|a|U|2427
9PJ8|1|a|G|2428
*
9PJ8|1|a|C|2440
9PJ8|1|a|G|2441
*
9PJ8|1|a|C|2463
9PJ8|1|a|G|2464
9PJ8|1|a|C|2465
9PJ8|1|a|C|2466
*
9PJ8|1|a|G|2566
9PJ8|1|a|A|2567
9PJ8|1|a|C|2568
9PJ8|1|a|U|2569
9PJ8|1|a|A|2570
9PJ8|1|a|G|2571
9PJ8|1|a|U|2572
9PJ8|1|a|G|2573
9PJ8|1|a|A|2574
9PJ8|1|a|U|2575
9PJ8|1|a|C|2576
9PJ8|1|a|U|2577
*
9PJ8|1|a|A|2603
9PJ8|1|a|C|2604
9PJ8|1|a|U|2605
9PJ8|1|a|C|2606
9PJ8|1|a|A|2607
9PJ8|1|a|A|2608
9PJ8|1|a|C|2609
9PJ8|1|a|G|2610
9PJ8|1|a|G|2611
9PJ8|1|a|A|2612
9PJ8|1|a|U|2613
9PJ8|1|a|A|2614
9PJ8|1|a|A|2615
9PJ8|1|a|A|2616
9PJ8|1|a|A|2617
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain 2
- Large ribosomal subunit protein bL35
- Chain c
- 50S ribosomal protein L2
- Chain k
- 50S ribosomal protein L15
- Chain v
- 50S ribosomal protein L27
- Chain w
- 50S ribosomal protein L28
Coloring options: