Loop J6_9PN5

3D structure

PDB id: 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Composite map of hypomethylated 80S ribosome treated with hygromycin B
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.75 Å

Loop

Sequence: GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length: 42 nucleotides
Bulged bases: 9PN5|1|A1|A|67, 9PN5|1|A1|U|329, 9PN5|1|A4|U|34
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: J6_18219.3
Basepair signature: cWW-cWW-cWW-cSS-cSS-F-tHW-F-tWW-cSH-tWW-cWW-F-cWW-tSS-tHW-cWW-F-F-F-tHS-cSS-cWW-cSS-tHS-cWW
Number of instances in this motif group: 4

Unit IDs

9PN5|1|A1|G|22
9PN5|1|A1|A|23
9PN5|1|A1|G|24
9PN5|1|A1|U|25
9PN5|1|A1|A|26
9PN5|1|A1|C|27
*
9PN5|1|A1|G|58
9PN5|1|A1|G|59
9PN5|1|A1|A|60
9PN5|1|A1|A|61
9PN5|1|A1|A|62
9PN5|1|A1|A|63
9PN5|1|A1|G|64
9PN5|1|A1|A|65
9PN5|1|A1|A|66
9PN5|1|A1|A|67
9PN5|1|A1|C|68
*
9PN5|1|A1|G|75
9PN5|1|A1|G|76
9PN5|1|A1|A|77
9PN5|1|A1|U|78
9PN5|1|A1|U|79
*
9PN5|1|A1|A|106
9PN5|1|A1|A|107
9PN5|1|A1|A|108
9PN5|1|A1|A|109
9PN5|1|A1|G|110
*
9PN5|1|A1|C|321
9PN5|1|A1|U|322
9PN5|1|A1|A|323
9PN5|1|A1|A|324
9PN5|1|A1|A|325
9PN5|1|A1|U|326
9PN5|1|A1|A|327
9PN5|1|A1|U|328
9PN5|1|A1|U|329
9PN5|1|A1|G|330
9PN5|1|A1|G|331
*
9PN5|1|A4|C|32
9PN5|1|A4|A|33
9PN5|1|A4|U|34
9PN5|1|A4|C|35

Current chains

Chain A1: 25S rRNA
Chain A4: 5.8S rRNA

Nearby chains

Chain AC: 60S ribosomal protein L4-A
Chain AL: 60S ribosomal protein L13-A
Chain AN: Large ribosomal subunit protein eL15A
Chain Ah: 60S ribosomal protein L35-A
Chain Ai: 60S ribosomal protein L36-A
Chain Aj: 60S ribosomal protein L37-A

J6_9PN5_001