J6_9PRD_002
3D structure
- PDB id
- 9PRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- UUUA*UUCG*CU*AGCA*UCAAUUGAUCC*GACCAACGGAACAA
- Length
- 39 nucleotides
- Bulged bases
- 9PRD|1|A|U|2739, 9PRD|1|A|U|2895, 9PRD|1|A|G|2916, 9PRD|1|A|A|2918
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PRD|1|A|U|2737
9PRD|1|A|U|2738
9PRD|1|A|U|2739
9PRD|1|A|A|2740
*
9PRD|1|A|U|2807
9PRD|1|A|U|2808
9PRD|1|A|C|2809
9PRD|1|A|G|2810
*
9PRD|1|A|C|2822
9PRD|1|A|U|2823
*
9PRD|1|A|A|2845
9PRD|1|A|G|2846
9PRD|1|A|C|2847
9PRD|1|A|A|2848
*
9PRD|1|A|U|2890
9PRD|1|A|C|2891
9PRD|1|A|A|2892
9PRD|1|A|A|2893
9PRD|1|A|U|2894
9PRD|1|A|U|2895
9PRD|1|A|G|2896
9PRD|1|A|A|2897
9PRD|1|A|U|2898
9PRD|1|A|C|2899
9PRD|1|A|C|2900
*
9PRD|1|A|G|2909
9PRD|1|A|A|2910
9PRD|1|A|C|2911
9PRD|1|A|C|2912
9PRD|1|A|A|2913
9PRD|1|A|A|2914
9PRD|1|A|C|2915
9PRD|1|A|G|2916
9PRD|1|A|G|2917
9PRD|1|A|A|2918
9PRD|1|A|A|2919
9PRD|1|A|C|2920
9PRD|1|A|A|2921
9PRD|1|A|A|2922
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 1
- 39S ribosomal protein L33, mitochondrial
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain D
- 39S ribosomal protein L2, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain W
- 39S ribosomal protein L27, mitochondrial
- Chain X
- 39S ribosomal protein L28, mitochondrial
Coloring options: