J6_9PSI_002
3D structure
- PDB id
- 9PSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- UUUA*UUCG*CU*AGCA*UCAAUUGAUCC*GACCAACGGAACAA
- Length
- 39 nucleotides
- Bulged bases
- 9PSI|1|A|U|2739, 9PSI|1|A|U|2895, 9PSI|1|A|G|2916, 9PSI|1|A|A|2918
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PSI|1|A|U|2737
9PSI|1|A|U|2738
9PSI|1|A|U|2739
9PSI|1|A|A|2740
*
9PSI|1|A|U|2807
9PSI|1|A|U|2808
9PSI|1|A|C|2809
9PSI|1|A|G|2810
*
9PSI|1|A|C|2822
9PSI|1|A|U|2823
*
9PSI|1|A|A|2845
9PSI|1|A|G|2846
9PSI|1|A|C|2847
9PSI|1|A|A|2848
*
9PSI|1|A|U|2890
9PSI|1|A|C|2891
9PSI|1|A|A|2892
9PSI|1|A|A|2893
9PSI|1|A|U|2894
9PSI|1|A|U|2895
9PSI|1|A|G|2896
9PSI|1|A|A|2897
9PSI|1|A|U|2898
9PSI|1|A|C|2899
9PSI|1|A|C|2900
*
9PSI|1|A|G|2909
9PSI|1|A|A|2910
9PSI|1|A|C|2911
9PSI|1|A|C|2912
9PSI|1|A|A|2913
9PSI|1|A|A|2914
9PSI|1|A|C|2915
9PSI|1|A|G|2916
9PSI|1|A|G|2917
9PSI|1|A|A|2918
9PSI|1|A|A|2919
9PSI|1|A|C|2920
9PSI|1|A|A|2921
9PSI|1|A|A|2922
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 1
- 39S ribosomal protein L33, mitochondrial
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain Ay
- Transfer RNA; tRNA
- Chain D
- 39S ribosomal protein L2, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain W
- 39S ribosomal protein L27, mitochondrial
- Chain X
- 39S ribosomal protein L28, mitochondrial
Coloring options: