J6_9Q1Q_002
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 9Q1Q|1|5|C|1501, 9Q1Q|1|5|G|1502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1Q|1|5|C|1352
9Q1Q|1|5|G|1353
9Q1Q|1|5|A|1354
9Q1Q|1|5|G|1355
*
9Q1Q|1|5|C|1384
9Q1Q|1|5|G|1385
9Q1Q|1|5|C|1386
9Q1Q|1|5|A|1387
9Q1Q|1|5|A|1388
*
9Q1Q|1|5|U|1395
9Q1Q|1|5|G|1396
9Q1Q|1|5|A|1397
9Q1Q|1|5|A|1398
9Q1Q|1|5|G|1399
*
9Q1Q|1|5|C|1418
9Q1Q|1|5|G|1419
9Q1Q|1|5|A|1420
9Q1Q|1|5|G|1421
*
9Q1Q|1|5|C|1464
9Q1Q|1|5|G|1465
9Q1Q|1|5|G|1466
*
9Q1Q|1|5|C|1499
9Q1Q|1|5|A|1500
9Q1Q|1|5|C|1501
9Q1Q|1|5|G|1502
9Q1Q|1|5|A|1503
9Q1Q|1|5|G|1504
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain L
- Large ribosomal subunit protein eL13
- Chain Q
- eL18
- Chain a
- 60S ribosomal protein L27a
- Chain b
- eL29
- Chain i
- 60S ribosomal protein L36
Coloring options: