J6_9Q1S_001
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 9Q1S|1|5|A|66, 9Q1S|1|8|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1S|1|5|G|21
9Q1S|1|5|G|22
9Q1S|1|5|C|23
9Q1S|1|5|G|24
9Q1S|1|5|A|25
9Q1S|1|5|C|26
*
9Q1S|1|5|G|57
9Q1S|1|5|G|58
9Q1S|1|5|A|59
9Q1S|1|5|A|60
9Q1S|1|5|A|61
9Q1S|1|5|A|62
9Q1S|1|5|G|63
9Q1S|1|5|A|64
9Q1S|1|5|A|65
9Q1S|1|5|A|66
9Q1S|1|5|C|67
*
9Q1S|1|5|G|74
9Q1S|1|5|G|75
9Q1S|1|5|A|76
9Q1S|1|5|U|77
9Q1S|1|5|U|78
*
9Q1S|1|5|A|105
9Q1S|1|5|A|106
9Q1S|1|5|G|107
9Q1S|1|5|A|108
9Q1S|1|5|G|109
*
9Q1S|1|5|C|332
9Q1S|1|5|U|333
9Q1S|1|5|A|334
9Q1S|1|5|A|335
9Q1S|1|5|A|336
9Q1S|1|5|U|337
9Q1S|1|5|A|338
9Q1S|1|5|C|339
*
9Q1S|1|8|G|33
9Q1S|1|8|U|34
9Q1S|1|8|C|35
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein eL13
- Chain N
- 60S ribosomal protein L15
- Chain h
- 60S ribosomal protein L35
- Chain i
- 60S ribosomal protein L36
- Chain j
- 60S ribosomal protein L37
Coloring options: