J6_9Q2M_004
3D structure
- PDB id
- 9Q2M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAUG*UUCCGGG*UAAAGGAAUU*ACAC*GGUU*AG
- Length
- 32 nucleotides
- Bulged bases
- 9Q2M|1|9|G|933, 9Q2M|1|9|U|935, 9Q2M|1|9|C|1057, 9Q2M|1|9|A|1058, 9Q2M|1|9|G|1187, 9Q2M|1|9|U|1188
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q2M|1|9|C|932
9Q2M|1|9|G|933
9Q2M|1|9|A|934
9Q2M|1|9|U|935
9Q2M|1|9|G|936
*
9Q2M|1|9|U|1007
9Q2M|1|9|U|1008
9Q2M|1|9|C|1009
9Q2M|1|9|C|1010
9Q2M|1|9|G|1011
9Q2M|1|9|G|1012
9Q2M|1|9|G|1013
*
9Q2M|1|9|U|1040
9Q2M|1|9|A|1041
9Q2M|1|9|A|1042
9Q2M|1|9|A|1043
9Q2M|1|9|G|1044
9Q2M|1|9|G|1045
9Q2M|1|9|A|1046
9Q2M|1|9|A|1047
9Q2M|1|9|U|1048
9Q2M|1|9|U|1049
*
9Q2M|1|9|A|1056
9Q2M|1|9|C|1057
9Q2M|1|9|A|1058
9Q2M|1|9|C|1059
*
9Q2M|1|9|G|1186
9Q2M|1|9|G|1187
9Q2M|1|9|U|1188
9Q2M|1|9|U|1189
*
9Q2M|1|9|A|1210
9Q2M|1|9|G|1211
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 1
- NediV ORF
- Chain CC
- 40S ribosomal protein S2
- Chain DD
- 40S ribosomal protein S3
- Chain LL
- Small ribosomal subunit protein uS17
- Chain OO
- Small ribosomal subunit protein uS11
- Chain PT
- P site Ala-tRNA
- Chain WW
- 40S ribosomal protein S15a
- Chain XX
- 40S ribosomal protein S23
- Chain aa
- eS26
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