J6_9Q3Q_001

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9Q3Q|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q3Q|1|A|G|45
9Q3Q|1|A|G|46
*
9Q3Q|1|A|C|179
9Q3Q|1|A|G|180
9Q3Q|1|A|A|181
9Q3Q|1|A|A|182
9Q3Q|1|A|C|183
*
9Q3Q|1|A|G|214
9Q3Q|1|A|G|215
9Q3Q|1|A|A|216
9Q3Q|1|A|A|217
9Q3Q|1|A|A|218
9Q3Q|1|A|A|219
9Q3Q|1|A|G|220
9Q3Q|1|A|A|221
9Q3Q|1|A|A|222
9Q3Q|1|A|A|223
9Q3Q|1|A|U|224
*
9Q3Q|1|A|A|231
9Q3Q|1|A|G|232
9Q3Q|1|A|A|233
9Q3Q|1|A|U|234
9Q3Q|1|A|U|235
*
9Q3Q|1|A|A|262
9Q3Q|1|A|G|263
9Q3Q|1|A|C|264
9Q3Q|1|A|A|265
9Q3Q|1|A|G|266
*
9Q3Q|1|A|C|426
9Q3Q|1|A|U|427
9Q3Q|1|A|A|428
9Q3Q|1|A|A|429
9Q3Q|1|A|A|430
9Q3Q|1|A|U|431
9Q3Q|1|A|A|432
9Q3Q|1|A|C|433

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34