Loop J6_9Q3Q

3D structure

PDB id: 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.01 Å

Loop

Sequence: UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 9Q3Q|1|A|U|2076, 9Q3Q|1|A|A|2388, 9Q3Q|1|A|U|2390, 9Q3Q|1|A|G|2428, 9Q3Q|1|A|A|2430, 9Q3Q|1|A|U|2431
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9Q3Q|1|A|U|2074
9Q3Q|1|A|U|2075
9Q3Q|1|A|U|2076
9Q3Q|1|A|A|2077
*
9Q3Q|1|A|U|2243
9Q3Q|1|A|U|2244
9Q3Q|1|A|U|2245
9Q3Q|1|A|G|2246
*
9Q3Q|1|A|C|2258
9Q3Q|1|A|U|2259
*
9Q3Q|1|A|A|2281
9Q3Q|1|A|G|2282
9Q3Q|1|A|C|2283
9Q3Q|1|A|A|2284
*
9Q3Q|1|A|U|2384
9Q3Q|1|A|C|2385
9Q3Q|1|A|A|2386
9Q3Q|1|A|U|2387
9Q3Q|1|A|A|2388
9Q3Q|1|A|G|2389
9Q3Q|1|A|U|2390
9Q3Q|1|A|G|2391
9Q3Q|1|A|A|2392
9Q3Q|1|A|U|2393
9Q3Q|1|A|C|2394
9Q3Q|1|A|C|2395
*
9Q3Q|1|A|G|2421
9Q3Q|1|A|C|2422
9Q3Q|1|A|U|2423
9Q3Q|1|A|C|2424
9Q3Q|1|A|A|2425
9Q3Q|1|A|A|2426
9Q3Q|1|A|C|2427
9Q3Q|1|A|G|2428
9Q3Q|1|A|G|2429
9Q3Q|1|A|A|2430
9Q3Q|1|A|U|2431
9Q3Q|1|A|A|2432
9Q3Q|1|A|A|2433
9Q3Q|1|A|A|2434
9Q3Q|1|A|A|2435

Current chains

Chain A: 23S Ribosomal RNA

Nearby chains

Chain 5: 50S ribosomal protein L33
Chain 7: 50S ribosomal protein L35
Chain C: 50S ribosomal protein L2
Chain N: 50S ribosomal protein L15
Chain Y: 50S ribosomal protein L27
Chain Z: 50S ribosomal protein L28

J6_9Q3Q_002