J6_9Q6Q_003

3D structure

PDB id

9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

9Q6Q|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q6Q|1|2A|G|44
9Q6Q|1|2A|C|45
*
9Q6Q|1|2A|G|179
9Q6Q|1|2A|G|180
9Q6Q|1|2A|A|181
9Q6Q|1|2A|A|182
9Q6Q|1|2A|C|183
*
9Q6Q|1|2A|G|214
9Q6Q|1|2A|G|215
9Q6Q|1|2A|A|216
9Q6Q|1|2A|G|217
9Q6Q|1|2A|A|218
9Q6Q|1|2A|G|219
9Q6Q|1|2A|G|220
9Q6Q|1|2A|A|221
9Q6Q|1|2A|A|222
9Q6Q|1|2A|A|223
9Q6Q|1|2A|G|224
*
9Q6Q|1|2A|C|231
9Q6Q|1|2A|G|232
9Q6Q|1|2A|A|233
9Q6Q|1|2A|C|234
9Q6Q|1|2A|U|235
*
9Q6Q|1|2A|A|262
9Q6Q|1|2A|C|263
9Q6Q|1|2A|C|264
9Q6Q|1|2A|A|265
9Q6Q|1|2A|G|266
*
9Q6Q|1|2A|C|426
9Q6Q|1|2A|U|427
9Q6Q|1|2A|A|428
9Q6Q|1|2A|A|429
9Q6Q|1|2A|G|430
9Q6Q|1|2A|U|431
9Q6Q|1|2A|A|432
9Q6Q|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34