Loop J6_9Q6Q

3D structure

PDB id: 9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å

Loop

Sequence: UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 9Q6Q|1|2A|U|2076, 9Q6Q|1|2A|A|2388, 9Q6Q|1|2A|U|2390, 9Q6Q|1|2A|G|2428, 9Q6Q|1|2A|A|2430, 9Q6Q|1|2A|U|2431, 9Q6Q|1|2A|A|2434
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9Q6Q|1|2A|U|2074
9Q6Q|1|2A|U|2075
9Q6Q|1|2A|U|2076
9Q6Q|1|2A|A|2077
*
9Q6Q|1|2A|U|2243
9Q6Q|1|2A|U|2244
9Q6Q|1|2A|U|2245
9Q6Q|1|2A|G|2246
*
9Q6Q|1|2A|C|2258
9Q6Q|1|2A|G|2259
*
9Q6Q|1|2A|C|2281
9Q6Q|1|2A|G|2282
9Q6Q|1|2A|C|2283
9Q6Q|1|2A|C|2284
*
9Q6Q|1|2A|G|2384
9Q6Q|1|2A|C|2385
9Q6Q|1|2A|C|2386
9Q6Q|1|2A|U|2387
9Q6Q|1|2A|A|2388
9Q6Q|1|2A|G|2389
9Q6Q|1|2A|U|2390
9Q6Q|1|2A|G|2391
9Q6Q|1|2A|A|2392
9Q6Q|1|2A|A|2393
9Q6Q|1|2A|C|2394
9Q6Q|1|2A|C|2395
*
9Q6Q|1|2A|G|2421
9Q6Q|1|2A|A|2422
9Q6Q|1|2A|U|2423
9Q6Q|1|2A|C|2424
9Q6Q|1|2A|A|2425
9Q6Q|1|2A|A|2426
9Q6Q|1|2A|C|2427
9Q6Q|1|2A|G|2428
9Q6Q|1|2A|G|2429
9Q6Q|1|2A|A|2430
9Q6Q|1|2A|U|2431
9Q6Q|1|2A|A|2432
9Q6Q|1|2A|A|2433
9Q6Q|1|2A|A|2434
9Q6Q|1|2A|A|2435

Current chains

Chain 2A: 23S Ribosomal RNA

Nearby chains

Chain 20: 50S ribosomal protein L27
Chain 21: 50S ribosomal protein L28
Chain 26: 50S ribosomal protein L33
Chain 28: 50S ribosomal protein L35
Chain 2D: 50S ribosomal protein L2
Chain 2P: 50S ribosomal protein L15
Chain 2Z: 50S ribosomal protein L25

J6_9Q6Q_004