J6_9Q6R_003

3D structure

PDB id

9Q6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-27 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

9Q6R|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q6R|1|2A|G|44
9Q6R|1|2A|C|45
*
9Q6R|1|2A|G|179
9Q6R|1|2A|G|180
9Q6R|1|2A|A|181
9Q6R|1|2A|A|182
9Q6R|1|2A|C|183
*
9Q6R|1|2A|G|214
9Q6R|1|2A|G|215
9Q6R|1|2A|A|216
9Q6R|1|2A|G|217
9Q6R|1|2A|A|218
9Q6R|1|2A|G|219
9Q6R|1|2A|G|220
9Q6R|1|2A|A|221
9Q6R|1|2A|A|222
9Q6R|1|2A|A|223
9Q6R|1|2A|G|224
*
9Q6R|1|2A|C|231
9Q6R|1|2A|G|232
9Q6R|1|2A|A|233
9Q6R|1|2A|C|234
9Q6R|1|2A|U|235
*
9Q6R|1|2A|A|262
9Q6R|1|2A|C|263
9Q6R|1|2A|C|264
9Q6R|1|2A|A|265
9Q6R|1|2A|G|266
*
9Q6R|1|2A|C|426
9Q6R|1|2A|U|427
9Q6R|1|2A|A|428
9Q6R|1|2A|A|429
9Q6R|1|2A|G|430
9Q6R|1|2A|U|431
9Q6R|1|2A|A|432
9Q6R|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34