J6_9Q6S_003

3D structure

PDB id

9Q6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-30 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

9Q6S|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q6S|1|2A|G|44
9Q6S|1|2A|C|45
*
9Q6S|1|2A|G|179
9Q6S|1|2A|G|180
9Q6S|1|2A|A|181
9Q6S|1|2A|A|182
9Q6S|1|2A|C|183
*
9Q6S|1|2A|G|214
9Q6S|1|2A|G|215
9Q6S|1|2A|A|216
9Q6S|1|2A|G|217
9Q6S|1|2A|A|218
9Q6S|1|2A|G|219
9Q6S|1|2A|G|220
9Q6S|1|2A|A|221
9Q6S|1|2A|A|222
9Q6S|1|2A|A|223
9Q6S|1|2A|G|224
*
9Q6S|1|2A|C|231
9Q6S|1|2A|G|232
9Q6S|1|2A|A|233
9Q6S|1|2A|C|234
9Q6S|1|2A|U|235
*
9Q6S|1|2A|A|262
9Q6S|1|2A|C|263
9Q6S|1|2A|C|264
9Q6S|1|2A|A|265
9Q6S|1|2A|G|266
*
9Q6S|1|2A|C|426
9Q6S|1|2A|U|427
9Q6S|1|2A|A|428
9Q6S|1|2A|A|429
9Q6S|1|2A|G|430
9Q6S|1|2A|U|431
9Q6S|1|2A|A|432
9Q6S|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34